TDS entry in case of customers

Dear Experts,

The scenario is u2013

I have received an advance of rs.1000 from customer & now I had made one invoice by deducting TDS with rate 1, now after going to the incoming payment screen as per mentioned in the manual I have put the TDS amount & done the incoming payment. Two JEu2019s were passed accordingly. Now my question how I should reconcile it against completes payment. Since when I am trying to do reconciliation it is nowhere reflecting my open invoice document.

Regards-

Mona.