BOM alternate selection during MRP run

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Hi

I have a peculiar scenario of BOM selection.

My client has couple of alternates to produce one product,typically a Process Industry.So,every time he plans the production,he considers the stock availability of the current alternates and decides which would be the best possible process(alternate) to produce the BOM now.

Example:

1. First BOM of A may produce A & Co-product C1 by comsuming B1 if it is produced in method 1

2. Second BOM of A may produce A & Co-product C1 by comsuming B2 if it is produced in method 2

3. Third BOM of A may produce A & Co-product C2 by comsuming B3 if it is produced in method 3

Now system should pick the appropriate method(Alternate BOM) while running MRP by accessing the current stock situation of C1,C2,B1,B2&B3.

Is there any possibility to address this scenario??

Thanks in advance