Duplicate Basis Components in the Integration Repository after 7.00 upgrade

I have recently upgraded our XI Development system from 6.40 to 7.0 but

we have discovered a duplicate entry in the Integration Repository

under SAP BASIS. There are two SAP BASIS entries, one called SAP BASIS

6.40 and one called SAP BASIS 7.0. According to our developer, the runtime engine will now treat this as a duplicate entry since both 7.00 and 6.40 contain Adapter metadata, and will delete the entire data during a full cache refresh. Also, all of the communication channels in the Integration Directory are

pointing to the older 6.40 version. How do I re-point them to the 7.00

version. I'm assuming this all happened when I preformed the step on page 44 of

the SAP NetWeaver 2004s Java Upgrade Guide, in the "Follow up

activities" section titled: "6.10 Importing XI Content for Software

component SAP_Basis 7.00". Am I missing a next step or doing something

wrong for the upgrade? I'd like to fix my process before moving this

into Production. Thanks every for your help.