So I raised a message to SAP.
Their recommendation is to use in MIGO action A05 "Release GR blocked stock" against each material document instead of using action A01 "Goods Receipt" against the whole PO. In this case the batch will be transferred from 107 MatDoc to 109 correctly.
Also there is a note 2037864 - MIGO: batch not defaulted for movement type 108 or 109
Upon it's implemented the system should transfer the batch number from 107 to 109 even while using action A01 "Goods Receipt" against a PO but only in case there are no different batches in 107 documents.
The idea to adopt the system so that to colect data from EKBE in one single material document with multiple items was rejected.
I think you just missed the restrictions for valuated GR blocked stock from OSS note 1110140 - Valuated GR Blocked Stock: Restrictions / FAQ
point 3: Split valuated materials cannot be managed in the GR blocked stock.
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